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Synthetic Chemical Offers Solution for Crops Facing Drought


Synthetic Chemical Offers Solution for Crops Facing Drought

UC Riverside-led research team shows pyrabactin mimics hormone employed by plants when water is scarce

(April 30, 2009)

Sean Cutler is an assistant professor of plant cell biology at UC Riverside.  Photo credit: UCR Strategic Communications. (Additional images below.)Enlarge

Sean Cutler is an assistant professor of plant cell biology at UC Riverside. Photo credit: UCR Strategic Communications. (Additional images below.)

RIVERSIDE, Calif. – Crops and other plants are constantly confronted with adverse environmental conditions, lowering yield and costing farmers billions of dollars annually. Plants use specialized signals, called stress hormones, to sense difficult times and adapt to stressful conditions to enhance survival.

Of the various stress hormones, abscisic acid (ABA), produced naturally by plants, has emerged over the last 30 years as the key hormone that helps plants cope with drought conditions. Under such stress, plants increase their ABA levels, which helps them survive the drought through a process not fully understood. So critical is this endogenous chemical to plant survival that researchers have engineered new drought-resistant crops by tinkering with the ABA pathway.

For years, scientists have contemplated spraying ABA directly onto crops to enhance their protection in times of stress. But ABA is a costly, complicated and light-sensitive molecule that has not found use in agriculture.

Now new research from the laboratory of Sean Cutler, an assistant professor of plant cell biology in the Department of Botany and Plant Sciences at the University of California, Riverside, suggests the possibility of spraying stable synthetic chemicals on plants to enhance stress tolerance during times of drought and improve yield.

Using a method called chemical genomics, pioneered by UC Riverside researchers for studying plant biology, Cutler identified pyrabactin, a new synthetic chemical that turns on the ABA signaling pathway in Arabidopsis, a small flowering plant used widely in plant biology laboratories as a model organism.

His lab then used pyrabactin to fish out a receptor for ABA – a highly controversial topic involving retractions of scientific papers as well as the publication of papers of questionable significance. A receptor is a protein molecule in a cell to which mobile signaling molecules may attach. Usually at the top of a signaling pathway, it functions like a boss relaying orders to the team below that then executes particular decisions in the cell.

“Scientists have been trying to solve the ABA receptor problem for more than 20 years, and claims for ABA receptors are not easily received by the scientific community,” said Cutler, who came to UCR in 2007 from the University of Toronto. “We screened thousands of chemicals for one that mimics ABA. We found pyrabactin activates some of the ABA receptors in plants and is an excellent mimic of ABA. Moreover, unlike ABA, it is stable and easy to make. It therefore suggests a highly effective chemical strategy for improving plants’ ability to survive under low-water conditions, potentially benefiting farmers in drought-prone areas worldwide.”

Cutler’s approach highlights the power of the chemical genetic approach for uncovering new leads for agrichemistry and, in turn, using those leads to understand a biological process.

“This is a striking example of how a chemical allowed us to solve a problem that genetics has been struggling with,” he said. “Clearly, chemical genetics can be used to bypass some of the limitations that slow down classical genetic analysis. Not too long ago, the United Nations called for a ‘blue revolution’ – the water equivalent of the green revolution – of improved water management and sharing. We have proven that we can enlist chemicals that modulate stress responses in crops as soldiers in the blue revolution. Now our goal is to design the best chemical soldiers possible.”

Study results appear April 30 in Science Express and in the May 22 issue of Science magazine.

Because of the prior questionable data in the ABA field, Cutler, the research paper’s lead author, took the unusual step of sharing his data with key competitors and turning them into collaborators before publishing the results. Several labs working in the ABA signaling field tested the ABA receptor that Cutler’s group identified, and validated his results. Scientists from these labs are co-authors of the research paper.

“Several high-profile papers have tried to claim discovery of ABA receptors but their research could not stand the test of time, and these papers were ultimately withdrawn,” said Natasha Raikhel, the director of UCR’s Center for Plant Cell Biology, of which Cutler is a member. “I believe this time, Dr. Cutler and his team have isolated a true ABA receptor.”

Next in the research, Cutler and collaborator Brian Volkman of the Medical College of Wisconsin will work on deducing the structure of receptor-bound ABA and use this information to guide the design of new chemicals that turn on the ABA signaling pathway. Cutler and collaborators also plan to further understand how the ABA receptors affect plant physiology.

Cutler was joined in the research by colleagues at UCR; the University of Toronto, Canada; UC San Diego; Universidad Politecnica, Spain; University of Ontario Institute of Technology, Canada; UC Santa Barbara; and the Medical College of Wisconsin.

Grants from the Canadian Research Chair, the Natural Sciences and Engineering Research Council (Canada), the National Science Foundation and the National Institutes of Health funded the five-year study.
Sean Cutler, an assistant professor of plant cell biology at UC Riverside, examines an <i>Arabidopsis</i> plant.  Photo credit: UCR Strategic Communications.Enlarge

Sean Cutler, an assistant professor of plant cell biology at UC Riverside, examines an Arabidopsis plant. Photo credit: UCR Strategic Communications.

Chemical structure of pyrabactin.  Image credit: Cutler lab, UC Riverside.Enlarge

Chemical structure of pyrabactin. Image credit: Cutler lab, UC Riverside.

Chemical structure of abscisic acid. Image credit: Cutler lab, UC Riverside.Enlarge

Chemical structure of abscisic acid. Image credit: Cutler lab, UC Riverside.

A hypothetical model of what abscisic acid (ABA) looks like when bound to the receptor protein, PYR1.  The yellow molecule is ABA and it is bound inside a pocket of PYR1. The colored regions in PYR1 (blue red, connected by dashed lines) show parts of PYR1 that are predicted to contact ABA. The distances between contacts points are shown with numbers (units = angstroms). Image credit: Cutler lab, UC Riverside.Enlarge

A hypothetical model of what abscisic acid (ABA) looks like when bound to the receptor protein, PYR1. The yellow molecule is ABA and it is bound inside a pocket of PYR1. The colored regions in PYR1 (blue red, connected by dashed lines) show parts of PYR1 that are predicted to contact ABA. The distances between contacts points are shown with numbers (units = angstroms). Image credit: Cutler lab, UC Riverside.

The University of California, Riverside (www.ucr.edu) is a doctoral research university, a living laboratory for groundbreaking exploration of issues critical to Inland Southern California, the state and communities around the world. Reflecting California's diverse culture, UCR's enrollment has exceeded 21,000 students. The campus opened a medical school in 2013 and has reached the heart of the Coachella Valley by way of the UCR Palm Desert Center. The campus has an annual statewide economic impact of more than $1 billion.

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